NEWS Archive

2023 9.19

Paper accepted in Nature Communications. Title: "Context-dependent perturbations in chromatin folding and the transcriptome by cohesin and related factors"

2023.9.7-9

• Nakato held a workshop titled "Analytic Theory of Single Cells and Spatial Information" in IIBMP2023 (at Chiba). Dr. Nagai and Oba-san had an oral talk.
• Dr. Lee had a poster presentation and got a poster award!

2023.7.18

Nakato Lab has been moved. The new room is room 503 of the Information Technology Center in the Asano Campus.

2023.6.19

Nakato gave a presentation about the IHEC project at the 16th Annual Meeting of the Japanese Society for Epigenetics.

2023.6.1

Paper by Dr. Wang accepted in iScience. Title: "Comprehensive multiomics analyses reveal pervasive involvement of aberrant cohesin binding in transcriptional and chromosomal disorder of cancer cells"

2023.4.14

This website has been renewed.

2023.4.1

We welcome Gima-san as a Master's student.

2023.3.23

Wang-san has earned the Ph.D. degree. Congratulations!

2023.3.1

Nakato had been selected for a research fund of Grant-in-Aid for Scientific Research (B). Project title: "Comparative single-cell analysis of disease-derived stem cells to identify the cell fate defect on the cell differentiation trajectory"

2023.1.27

Nakato has been selected for a research fund from Fusion Oriented REsearch for disruptive Science and Technology (FOREST). Project title: "Development of a computational platform for novel large-scale genomic analysis".

2022.11.30-12.2

• At MBSJ2022 (in Makuhari, Chiba), Nakato held a workshop titled "Toward understanding the role of 3D genome structure by integrative analysis" and had an oral talk in it.
• Also in MBSJ2022, Dr. Saijou had an oral talk. Dr. Nagai and Ph.D. students Wang and Oba had poster presentations.

2022.9.27

Paper by a Ph.D. student Wang accepted in Nucleic Acids Research. Title: "CohesinDB: a comprehensive database for decoding cohesin-related epigenomes, 3D genomes and transcriptomes in human cells"
Press release

2022.9.13-15

Dr. Nakato held a workshop titled "Genome analysis based on large-scale NGS data" in IIBMP2022 (at Osaka). Dr. Lee and Ph.D. student Wang had an oral talk. Dr. Nagai had a poster presentation.

2022.7.1

Dr. Nakato was promoted to associate professor.

2022.6.9

Paper by a Ph.D. student Wang accepted in Nature Communications. Title: "Large-scale multi-omics analysis suggests specific roles for intragenic cohesin in transcriptional regulation" Press release

2022.4.1

We welcome Dr. Nagaoka as a project researcher and Zhou-san as a Master's student.

Dr. Nagai was promoted to research associate.

2021.12.1

Paper by Ph.D. student Wang accepted in Briefing in Bioinformatics. Title: "HiC1Dmetrics: framework to extract various one-dimensional features from chromosome structure data" Press release

2021.12.1-3

In MBSJ2021 (at Yokohama, Kanagawa), Dr. Saijou had an oral talk and Dr. Nagai, Ph.D. students Wang and Oba and an intern student Yamada had poster presentations.

2021.10.1

We welcome Dr. Lee as a project research associate and Ren-san as a reserach student.

2021.9.27-29

Dr. Nakajima had an oral talk and Oba-san had a poster presentation in IIBMP2021 (online).

2021.7.22

Paper by Dr. Nakajima accepted in Nucleic Acids Research. Title: "Codependency and mutual exclusivity for gene community detection from sparse single-cell transcriptome data" Press release

2021.4.1

We welcome a new secretary Koga-san.

2021.1.13

Dr. Nakato had been selected for a research fund of 2020 iPS Academia Japan Grant. Project title: "Development of a single-cell analysis system toward elucidating the mechanism of cell differentiation defects in rare diseases-derived iPS cells"

2021.1.4

We welcome Dr. Nagai as a project researcher.

2020.12.2-4

Dr. Nakato held a workshop titled "Toward understanding cellular diversity by single cell analyses and interdisciplinary approaches" in MBSJ2020 (online). Dr. Nakajima had an oral talk at the workshop. Dr. Saijou, Ph.D. students Wang and Oba had a poster presentation.

2020.9.29

Dr. Nakato had been selected for a research fund of AMED-PRIME "Early Life Stage". Project title: "Development of a robust computational platform for data-driven epigenome analysis"

2020.9.4

Dr. Nakato had a talk in 2nd Mathematical Biology Workshop at Kyoto University.

2020.8.21

Paper accepted in Computational and Structural Biotechnology Journal: "Toward understanding the dynamic state of 3D genome"

2020.3.30

Paper accepted in Methods: "Methods for ChIP-seq analysis: A practical workflow and advanced applications"

2020.3.15-19

Ph.D student Wang will have a poster presentation in Keystone Symposia "Higher-Order Chromatin Architecture in Time and Space" -> cancelled due to COVID19.

2019.12.19

Paper accepted in Epigenetics & Chromatin: "Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells"

2019.12.3-6

Dr. Nakato held a workshop titled "Mathematical Sciences of Single Molecule and Cell for Understanding and Controling Cellular Diversity" in MBSJ2019.

2019.9.24-26

Dr. Nakato gave a talk in RNA Frontier Meeting 2019.

2019.9.19

Dr. Nakato gave a talk in The 4th IQB symposium.

2019.6.26

Dr. Nakato gave a talk in The 13th International Workshop on Advanced Genomics.